minor (CA1PyramidalCell.xml)
PSICS project generated from: CA1PyramidalCell.ncx
Total CPU time 0.2200 seconds; at 10:35:38 Thu 24 Sep 2009
| Compartments | Stochastic channels / cpmts | Continuous channels / cpmts | Non Gated channels / cpmts | CPU Time / s |
| 4 | 0 / 0 | 0 / 0 | 286 / 4 | 0.220 |
 |
Morphology: AllCml_2
Predefined views
CG_CML_v
All files
| Model | Preprocessed | Outupt data | Reference data etc |
| CA1PyramidalCell.xml AllCml_2.xml membrane_AllCml_2.xml environment.xml recording.xml pasCA1.xml |
psics-out.ppp |
log.txt psics-out.sum psics-out.dat psics-out.txt |
time.txt Seg0_soma_0.txt CG_CML_0.dat.txt |
Model
Archive file of the complete model: minor.jarCA1PyramidalCell.xml
<PSICSRun timeStep="0.0010ms" runTime="100.0ms" startPotential="-65.0mV"
environment="environment" morphology="AllCml_2" properties="membrane_AllCml_2"
access="recording" stochThreshold="0" squareCaps="true" >
<info>PSICS project generated from: CA1PyramidalCell.ncx</info>
<StructureDiscretization baseElementSize="5.0"/>
<ViewConfig>
<LineGraph width="500" height="400">
<XAxis min="0" max="100.0" label="time / ms"/>
<YAxis min="-90.0" max="50.0"/>
<View id="CG_CML_v" xmin="0" xmax="100.0" ymin="-90.0" ymax="50.0"/>
<Line file="psics-out.txt" color="#000000" show="2"/>
</LineGraph>
</ViewConfig>
</PSICSRun>
AllCml_2.xml
<CellMorphology id="AllCml_2">
<Point id="Seg0_soma_0_root" x="0.0" y="0.0" z="0.0" r="5.0" label="~all~~soma_group~"/>
<Point parent="Seg0_soma_0_root" id="Seg0_soma_0" x="0.0" y="15.0" z="0.0" r="5.0" label="~all~~soma_group~"/>
<Point parent="Seg0_soma_0" id="Segment_1_minor" x="0.0" y="15.0" z="0.0" r="1.0" minor="true" label="~all~~dendrite_group~"/>
<Point parent="Segment_1_minor" id="Segment_1" x="0.0" y="30.0" z="0.0" r="2.0" label="~all~~dendrite_group~"/>
</CellMorphology>
membrane_AllCml_2.xml
<CellProperties id="membrane_AllCml_2" cytoplasmResistivity="1.5ohm_m" membraneCapacitance="0.01F_per_m2"> <ChannelPopulation channel="pasCA1" density="0.357143014669per_um2" color="0xff0000"/> </CellProperties>
environment.xml
<CellEnvironment id="environment" temperature="35.0Celsius">
<Ion id="non_specific" name="non_specific_ion" reversalPotential="-58mV"/>
</CellEnvironment>
recording.xml
<Access id="recording" saveInterval="0.0010ms" separateFiles="true" recordClamps="true">
<CurrentClamp at="Seg0_soma_0" lineColor="red">
<CurrentPulse start="20.0ms" duration="60.0ms" to="0.0038nA"/>
</CurrentClamp>
<VoltageRecorder at="Seg0_soma_0" lineColor="0x000000" label="CG_CML_0.dat"/>
</Access>
pasCA1.xml
<KSChannel id="pasCA1" permeantIon="non_specific" gSingle="0.9999999717180685pS"> <OpenState id="o1"/> </KSChannel>